PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6BL_EEAA2A7E3.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family WRKY
Protein Properties Length: 146aa    MW: 15980.1 Da    PI: 11.1797
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6BL_EEAA2A7E3.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.64.6e-324199259
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
                           +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers++dp++++itY++eHnh+
  Traes_6BL_EEAA2A7E3.1 41 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRTDPNMLVITYTSEHNHP 99
                           699************************998****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-3233101IPR003657WRKY domain
PROSITE profilePS5081133.17835101IPR003657WRKY domain
SuperFamilySSF1182901.44E-2738101IPR003657WRKY domain
SMARTSM007741.5E-3840100IPR003657WRKY domain
PfamPF031065.5E-274299IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MSSSPRGGGI KRRKNQARKV VCIPAPAAAV AGKTTGEVVP SDLWAWRKYG QKPIKGSPYP  60
RGYYRCSSSK GCPARKQVER SRTDPNMLVI TYTSEHNHPW PTQRNVLAGS TRSHYAKNSS  120
SNTAAAASKN SKNCSRNQHK PVVKAE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-2029101474WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3689940.0AK368994.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2083H02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572849.16e-79PREDICTED: probable WRKY transcription factor 35
SwissprotO647472e-65WRK35_ARATH; Probable WRKY transcription factor 35
TrEMBLW5GNH11e-104W5GNH1_WHEAT; Uncharacterized protein
STRINGMLOC_64446.19e-89(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25923888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.15e-61WRKY DNA-binding protein 35
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]